References

Literature and web-links associated with Databases:

  • Altschul, Stephen F., et al. (1997) “Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.” Nucleic acids research 25.17: 3389-3402. DOI:10.1093/nar/25.17.3389
  • Arunkumar, K. P., Tomar, A., Daimon, T., Shimada, T., & Nagaraju, J. (2008). WildSilkbase: an EST database of wild silkmoths. BMC genomics, 9(1), 338. DOI: 10.1186/1471-2164-9-338
  • Beccaloni, G. W., Viloria, A. L., Hall, S. K., & Robinson, G. S. (2008). Catalogue of the hostplants of the Neotropical butterflies. Sociedad Entomológica Aragonesa
  • Bi, J., Luo, G., Wang, X., & Zhu, Z. (2014). The construction of the spatio-temporal database of the ancient Silk Road within Xinjiang province during the Han and Tang dynasties. In IOP Conference Series: Earth and Environmental Science (Vol. 17, No. 1, p. 012169). IOP Publishing. Click Here
  • Chan, A. P., Crabtree, J., Zhao, Q., Lorenzi, H., Orvis, J., Puiu, D., … & Cahoon, E. B. (2010).Draft genome sequence of the oilseed species Ricinus communis. Nature biotechnology, 28(9), 951-956. DOI:10.1038/nbt.1674
  • Dewangan, S. K., Sahu, K. R., Patnayak, S. K., & Soni, S. (2013, January). Sericulture for Employment Generation among the Tribal-A Study of Two Trible Block of Raigarh Dist.[CG] India. In Proceedings of World Academy of Science, Engineering and Technology (No. 79, p. 1916). World Academy of Science, Engineering and Technology (WASET). Click Here
  • Dewangan, S. K., Sahu, K. R., & Achari, K. V. (2011). Sericulture-A Tool of Eco-System Checking Through Tribal. Journal of Environmental Research and Development, 6(1).
  • Dong, Q., Schlueter, S. D., & Brendel, V. (2004). PlantGDB, plant genome database and analysis tools. Nucleic acids research, 32(suppl 1), D354-D359. DOI: 10.1093/nar/gkh046
  • Duan, J., Li, R., Cheng, D., Fan, W., Zha, X., Cheng, T., … & Xia, Q. (2009). SilkDB v2. 0: a platform for silkworm (Bombyx mori) genome biology. Nucleic acids research, gkp801. DOI: 10.1093/nar/gkp801
  • El-Sayed, A. M. (2012). The pherobase: database of pheromones and semiochemicals. See http://www. pherobase. com.
  • Gendler, K., Paulsen, T., & Napoli, C. (2008). ChromDB: the chromatin database. Nucleic acids research, 36(suppl 1), D298-D302. DOI: 10.1093/nar/gkm768
  • Goldsmith, M. R., Shimada, T., & Abe, H. (2005). The genetics and genomics of the silkworm, bombyx mori*. Annu. Rev. Entomol., 50, 71-100. DOI: 10.1146/annurev.ento.50.071803.130456
  • Goldsmith, M. R., & Wilkins, A. S. (2006). Molecular model systems in the Lepidoptera. Cambridge University Press. DOI: 10.1126/science.269.5231.1743
  • Goodstein, D. M., Shu, S., Howson, R., Neupane, R., Hayes, R. D., Fazo, J., … & Rokhsar, D. S. (2012). Phytozome: a comparative platform for green plant genomics. Nucleic acids research, 40(D1), D1178-D1186. DOI: 10.1093/nar/gkr944
  • Griffiths-Jones, S., Saini, H. K., van Dongen, S., & Enright, A. J. (2008). miRBase: tools for microRNA genomics. Nucleic acids research, 36(suppl 1), D154-D158.DOI: 10.1093/nar/gkm952
  • Griffiths-Jones, S., Grocock, R. J., Van Dongen, S., Bateman, A., & Enright, A. J. (2006). miRBase: microRNA sequences, targets and gene nomenclature. Nucleic acids research, 34(suppl 1), D140-D144. DOI: 10.1093/nar/gkj112
  • Griffiths‐Jones, S. (2004). The microRNA registry. Nucleic acids research, 32(suppl 1), D109-D111. DOI:10.1093/nar/gkh023
  • Guo, A. Y., Chen, X., Gao, G., Zhang, H., Zhu, Q. H., Liu, X. C., … & Luo, J. (2008). PlantTFDB: a comprehensive plant transcription factor database. Nucleic Acids Research, 36(suppl 1), D966-D969. DOI:10.1093/nar/gkm841
  • He, N., Zhang, C., Qi, X., Zhao, S., Tao, Y., Yang, G., … & Lu, M. (2013). Draft genome sequence of the mulberry tree Morus notabilis. Nature communications, 4. DOI: 10.1038/ncomms3445
  • International Silkworm Genome Consortium. (2008). The genome of a lepidopteran model insect, the silkworm Bombyx mori. Insect biochemistry and molecular biology, 38(12), 1036-1045.
  • Jin, J., Zhang, H., Kong, L., Gao, G., & Luo, J. (2013). PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. Nucleic acids research, gkt1016.DOI: 10.1093/nar/gkt1016
  • Kajiwara, H., Nakane, K., Piyang, J., Imamaki, A., Ito, Y., Togasaki, F., … & Nomura, R. (2006). Draft of silkworm proteome database. Journal of Electrophoresis, 50(3/4), 39-41.DOI.org/10.2198/jelectroph.50.39
  • Kakati, L. N., Chutia, B. C., & Rawat, G. S. (2009). Diversity and ecology of wild sericigenous insects in Nagaland, India. In Tropical ecology (Vol. 50, No. 1, pp. 137-146). International Society for Tropical Ecology.
  • Kasoju, N., Bhonde, R. R., & Bora, U. (2009). Preparation and characterization of Antheraea assama silk fibroin based novel non‐woven scaffold for tissue engineering applications. Journal of tissue engineering and regenerative medicine, 3(7), 539-552.DOI:10.1002/term.196
  • Kim, C., Kim, K., Park, D., Seol, Y., Hahn, J., Park, S., & Kang, P. (2010). An integrated database for the enhanced identification of silkworm gene resources. Bioinformation, 4(10), 436.
  • Kozomara, A., & Griffiths-Jones, S. (2014). miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic acids research, 42(D1), D68-D73. DOI:10.1093/nar/gkt1181
  • Kozomara, A., & Griffiths-Jones, S. (2010). miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic acids research, gkq1027. DOI: 10.1093/nar/gkq1027
  • Krishnan, R. R., Sumathy, R., Bindroo, B. B., & Naik, V. G. (2014). MulSatDB: a first online database for mulberry microsatellites. Trees, 28(6), 1793-1799. DOI:10.1007/s00468-014-1086-y
  • Lee, T. H., Tang, H., Wang, X., & Paterson, A. H. (2013). PGDD: a database of gene and genome duplication in plants. Nucleic acids research, 41(D1), D1152-D1158. DOI:10.1093/nar/gks1104
  • Li, T., Qi, X., Zeng, Q., Xiang, Z., & He, N. (2014). MorusDB: a resource for mulberry genomics and genome biology. Database, 2014, bau054. DOI: 10.1093/database/bau054
  • Li, Y., Wang, G., Tian, J., Liu, H., Yang, H., Yi, Y., … & Zhang, Z. (2012). Transcriptome analysis of the silkworm (Bombyx mori) by high-throughput RNA sequencing. PloS one, 7(8), e43713.DOI: 10.1371/journal.pone.0043713
  • Ling, Y. , Cen F. , & Jiazhong, T. (2008) 1st International Symposium of Textile Bioengineering and Informatics, 1160-1164
  • Malik, M. S., Kaushal, P., & Sah, R. B. (2008). Socio-economic upliftment of tribal communities in Jharkhand through Agroforestry based farming system. Birsa Agril. University, Ranchi.
  • Mita, K., Morimyo, M., Okano, K., Koike, Y., Nohata, J., Kawasaki, H., … & Goldsmith, M. R. (2003). The construction of an EST database for Bombyx mori and its application. Proceedings of the National Academy of Sciences, 100(24), 14121-14126. DOI:10.1073/pnas.2234984100
  • Mita, K., Kasahara, M., Sasaki, S., Nagayasu, Y., Yamada, T., Kanamori, H., … & Kadono-Okuda, K. (2004). The genome sequence of silkworm, Bombyx mori. Dna Research, 11(1), 27-35. DOI: 10.1093/dnares/11.1.27
  • Mueller, L. (2014, January). CassavaBase-A Platform for Next-Generation Breeding. In Plant and Animal Genome XXII Conference. Plant and Animal Genome. Click Here
  • Muthumanickkam, A., Subramanian, S., Goweri, M., Beaula, W. S., & Ganesh, V. (2013). Comparative study on eri silk and mulberry silk fibroin scaffolds for biomedical applications. Iranian Polymer Journal, 22(3), 143-154. DOI:10.1007/s13726-012-0113-3
  • Nagarajan, N., & Navajas-Pérez, R. (2014). Papaya Repeat Database. In Genetics and Genomics of Papaya (pp. 225-240). Springer New York. DOI: 10.1007/978-1-4614-8087-7_13
  • Nagaraju, J., Klimenko, V., & Couble, P. (2000). The silkworm Bombyx mori, a model genetic system. Encyclopedia of genetics, 219239. Click Here
  • Nagaraju, J., & Goldsmith, M. R. (2002). Silkworm genomics-progress and prospects. CURRENT SCIENCE-BANGALORE-, 83(4), 415-425. Click Here
  • Pan, G., Xu, J., Li, T., Xia, Q., Liu, S. L., Zhang, G., … & Liu, T. (2013). Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation. BMC genomics, 14(1), 186. DOI: 10.1186/1471-2164-14-186
  • Papanicolaou, A., Gebauer-Jung, S., Blaxter, M. L., McMillan, W. O., & Jiggins, C. D. (2008). ButterflyBase: a platform for lepidopteran genomics. Nucleic acids research, 36(suppl 1), D582-D587.DOI: 10.1093/nar/gkm853
  • Parr, C. S., Wilson, N., Leary, P., Schulz, K., Lans, K., Walley, L., … & Holmes, J. (2014). The encyclopedia of life v2: providing global access to knowledge about life on earth. Biodiversity data journal, 2, e1079.DOI: 10.3897/BDJ.2.e1079
  • Prasad, M. D., Muthulakshmi, M., Arunkumar, K. P., Madhu, M., Sreenu, V. B., Pavithra, V., … & Nagaraju, J. (2005). SilkSatDb: a microsatellite database of the silkworm, Bombyx mori. Nucleic acids research, 33(suppl 1), D403-D406.DOI: 10.1093/nar/gki099
  • Proost, S., Van Bel, M., Sterck, L., Billiau, K., Van Parys, T., Van de Peer, Y., & Vandepoele, K. (2009). PLAZA: a comparative genomics resource to study gene and genome evolution in plants. The Plant Cell, 21(12), 3718-3731. DOI: http://dx.doi.org/10.1105/tpc.109.071506
  • Proost, S., Van Bel, M., Vaneechoutte, D., Van de Peer, Y., Inzé, D., Mueller-Roeber, B., & Vandepoele, K. (2014). PLAZA 3.0: an access point for plant comparative genomics. Nucleic acids research, gku986.DOI: 10.1093/nar/gku986
  • Ratnasingham, S., & Hebert, P. D. (2007). BOLD: The Barcode of Life Data System (http://www. barcodinglife. org). Molecular ecology notes, 7(3), 355-364. DOI: 10.1111/j.1471-8286.2007.01678.x
  • Rawlings, N. D., Barrett, A. J., & Bateman, A. (2012). MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic acids research, 40(Database-Issue), 343-350. DOI: 10.1093/nar/gkr987
  • Robinson, G. S., Ackery, P. R., Kitching, I. J., Beccaloni, G. W., & Hernández, L. M. (2001). Hostplants of the moth and butterfly caterpillars of the Oriental Region. Natural History Museum.
  • Robinson, G. S. (2002). Hostplants of the moth and butterfly caterpillars of America north of Mexico. American Entomological Institute.69, 824
  • Robinson, G. S., Ackery, P. R., Kitching, I. J., Beccaloni, G. W., & Hernández, L. M. (2010). HOSTS―a Database of the World’s Lepidopteran Hostplants. Natural History Museum, London. November, 10, 2010.
  • Sato, S., Hirakawa, H., Isobe, S., Fukai, E., Watanabe, A., Kato, M., … & Takahashi, C. (2010). Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L. DNA research, dsq030.DOI: 10.1093/dnares/dsq030
  • Shimomura, M., Minami, H., Suetsugu, Y., Ohyanagi, H., Satoh, C., Antonio, B., … & Nagaraju, J. (2009). KAIKObase: an integrated silkworm genome database and data mining tool. BMC genomics, 10(1), 486.DOI: 10.1186/1471-2164-10-486
  • Shrivastav, P. K. (2005). Sericulture activities provide a perfect choice for the women. Sericulture and seri-biodiversity.
  • Singh, K. C., & Chakravorty, R. (2006). Seri-biodiversity of North Eastern India-an update. Biodiversity Conservation and Future Concern. Gauhati University, Guwahati, 8-19.
  • Srivastav, P. K., Thangavelu, K., & Baghel, S. S. (2005). Sericulture and Seri-biodiversity. Associated Publishing.
  • Kundu, S. C. (2012). Biomat _dBase: A Database on Biomaterials. Open Tissue Engineering and Regenerative Medicine Journal, 5, 59-67. Click Here
  • Szcześniak, M. W., & Makałowska, I. (2014). miRNEST 2.0: a database of plant and animal microRNAs. Nucleic acids research, 42(D1), D74-D77. DOI: 10.1093/nar/gkt1156
  • Szcześniak, M. W., Deorowicz, S., Gapski, J., Kaczyński, Ł., & Makałowska, I. (2012). miRNEST database: an integrative approach in microRNA search and annotation. Nucleic acids research, 40(D1), D198-D204. DOI: 10.1093/nar/gkr1159
  • Tamura, T., Thibert, C., Royer, C., Kanda, T., Eappen, A., Kamba, M., … & Shirk, P. (2000). Germline transformation of the silkworm Bombyx mori L. using a piggyBac transposon-derived vector. Nature biotechnology, 18(1), 81-84. DOI: 10.1038/71978
  • Thakur, S., Jha, S., & Chattoo, B. B. (2011). CastorDB: a comprehensive knowledge base for Ricinus communis. BMC research notes, 4(1), 356.DOI: 10.1186/1756-0500-4-356
  • Thangavelu, K. (1991). Wild sericigenous insects of India: A need for conservation. Wild silk moths, 91, 71-77.
  • Tomita, M., Munetsuna, H., Sato, T., Adachi, T., Hino, R., Hayashi, M., … & Yoshizato, K. (2003). Transgenic silkworms produce recombinant human type III procollagen in cocoons. Nature biotechnology, 21(1), 52-56.DOI: 10.1038/nbt771
  • Tomita, M. (2011). Transgenic silkworms that weave recombinant proteins into silk cocoons. Biotechnology letters, 33(4), 645-654.DOI 10.1007/s10529-010-0498-z
  • USDA, N. (2014). The PLANTS Database ( http://plants. usda. gov, 15 May 2014). National Plant Data Team. Greensboro, NC, 27401-4901.
  • Wang, J., Xia, Q., He, X., Dai, M., Ruan, J., Chen, J., … & Feng, T. (2005). SilkDB: a knowledgebase for silkworm biology and genomics. Nucleic acids research, 33(suppl 1), D399-D402. DOI: 10.1093/nar/gki116
  • Xia, Q., Zhou, Z., Lu, C., Cheng, D., Dai, F., Li, B., … & Pan, G. (2004). A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science, 306(5703), 1937-1940.DOI: 10.1126/science.1102210
  • Xia, Q., Cheng, D., Duan, J., Wang, G., Cheng, T., Zha, X., … & He, N. (2007). Microarray-based gene expression profiles in multiple tissues of the domesticated silkworm, Bombyx mori. Genome biology, 8(8), 1-13. DOI: 10.1186/gb-2007-8-8-r162
  • Xu, H. E., Zhang, H. H., Xia, T., Han, M. J., Shen, Y. H., & Zhang, Z. (2013). BmTEdb: a collective database of transposable elements in the silkworm genome. Database, 2013, bat055.DOI: 10.1093/database/bat055
  • Yang, X., Liu, X. M., Sun, X. K., & Feng, C. (2012, May). Study on Selvage Parameter Based on Silk Fabric Specifications Database. In Advanced Materials Research (Vol. 502, pp. 159-163). DOI:10.4028/www.scientific.net/AMR.502.159
  • Zhang, H., Jin, J., Tang, L., Zhao, Y., Gu, X., Gao, G., & Luo, J. (2011). PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. Nucleic acids research, 39(suppl 1), D1114-D1117. DOI: 10.1093/nar/gkq1141
  • Zhang, Z., Yin, C., Liu, Y., Jie, W., Lei, W., & Li, F. (2014). iPathCons and iPathDB: an improved insect pathway construction tool and the database. Database, 2014, bau105.DOI: 10.1093/database/bau105
  • Zhou, Y. (1958). General Entomology. Beijing, China: High Education Publication House.

Web-links:

  1. http://www.wormspit.com/wild.htm  (Wormspit)
  2. http://butterflybase.ice.mpg.de/
  3. http://www.ag.auburn.edu/enpl//hyche/saturniidae.html
  4. http://www.silkdb.org/microarray/
  5. http://124.17.27.136/gbrowse2/
  6. http://papilio.ab.a.u-tokyo.ac.jp/genome/
  7. www.cdfd.org.in/insatdbhttp://www.cdfd.org.in/silksatdb
  8. http://mirnest.amu.edu.pl
  9. http://lemur.amu.edu.pl/share/php/mirnest_1.0
  10. http://www.cdfd.org.in/wildsilkbase/
  11. http://silkbase.ab.a.u-tokyo.ac.jp/cgi-bin/index.cgi
  12. http://sgp.dna.affrc.go.jp/KAIKObase/
  13. http://sgp.dna.affrc.go.jp/ETDB/
  14. http://www.silkdb.org
  15. http://cse.nias.affrc.go.jp/natuo/en/aburako_top_en.htm
  16. http://www.shigen.nig.ac.jp/wildmoth/index.jsp
  17. http://www.naas.go.kr/silkworm/english
  18. http://www.nbrp.jp/
  19. http://papilio.ab.a.u-tokyo.ac.jp/small_RNA/all_smallRNA.txt
  20. http://www.shigen.nig.ac.jp/silkwormbase/about_kaiko.jsp
  21. http://www.nhm.ac.uk/research
  22. http://merops.sanger.ac.uk/
  23. http://bol.uvm.edu
  24. http://www.boldsystems.org/
  25. http://www.mirbase.org/
  26. http://gene.cqu.edu.cn/BmTEdb/
  27. http://kaiko2ddb.dna.affrc.go.jp/
  28. http://kr.expasy.org/ch2d/make2ddb/
  29. http://www.btismysore.in/silkprot/
  30. http://210.212.197.30/SilkPPI/
  31. http://www.btismysore.in/SilkTF/
  32. http://dbbiomat.iitkgp.ernet.in
  33. http://ento.njau.edu.cn/ipath/
  34. http://silkpathdb.swu.edu.cn/silkpathdb
  35. http://www.btismysore.in/dbase.html
  36. http://www.eol.org
  37. http://www.itis.gov/
  38. https://gd.eppo.int
  39. http://morus.swu.edu.cn/morusdb/
  40. http://btismysore.in/mulsatdb/index.html
  41. http://www.btismysore.in/MulGenomeDb/mghome.html
  42. http://btismysore.in/pgene.html
  43. http://www.tnaugenomics.com/castor/index.php
  44. http://www.plantgenome.uga.edu/papaya/
  45. ftp://ftp.cbcb.umd.edu/pub/data/CPR-DB
  46. http://www.kazusa.or.jp/jatropha/
  47. http://cassava.igs.umaryland.edu/cgi-bin/index.cgi
  48. http://www.cassava-genome.cn/
  49. https://w3.pierroton.inra.fr/QuercusPortal/index.php?p=fmap
  50. http://w3.pierroton.inra.fr/CartoChene/index.php
  51. http://w3.pierroton.inra.fr/cgi-bin/cmap
  52. http://w3.pierroton.inra.fr/TreePop/
  53. http://ssrdatabase.pierroton.inra.fr/login/login
  54. http://www.evoltree.eu/index.php/e-recources/databases/snp
  55. https://gd2.pierroton.inra.fr/gd2/login/login
  56. http://w3.pierroton.inra.fr:8006/materials
  57. http://www.evoltree.eu/index.php/e-recources/databases/candidate-genes
  58. http://w3.pierroton.inra.fr/fossile/index.php
  59. http://www.plantgdb.org
  60. http://www.phytozome.net/
  61. http://plaza.psb.ugent.be/
  62. http://www.chromdb.org/index.html
  63. http://planttfdb.cbi.pku.edu.cn/
  64. http://plants.usda.gov/java/
  65. http://www.brc.ac.uk/dbif/homepage.aspx
  66. http://www.entsoc.org/pubs/common_names
  67. http://www.butterfliesandmoths.org/
  68. http://www.pherobase.com/
  69. http://inpn.mnhn.fr/accueil/index
  70. http://www.nhm.ac.uk/our-science/data/hostplants/